BirdSongToolbox.import_data.ImportData¶

class BirdSongToolbox.import_data.ImportData(bird_id: str, session: str, data_type='LPF_DS', location=None)¶

Imports Data Specified by user into a Object Oriented Structure

Parameters

bird_idstr: Bird identifier to locate specified bird’s data folder
sessionstr: Experiment day to locate it’s Folder
data_typestring: String directing the type of neural signal to import, (Options: ‘LPF_DS’, ‘LPF’, ‘Raw’)
locationstr or Path, optional: Location to search for the data other than default CHUNKED_DATA_PATH (Optional if default path configured)

Attributes

bird_idstr: Bird identifier to locate specified bird’s data folder
datestr: Experiment day to locate it’s Folder
song_neurallist | shape = [Chunk]->(channels, Samples): Neural data that is Low-Pass Filter at 400 Hz and Downsampled to 1 KHz, list of 2darrays
song_audiolist | shape = [Chunk]->(channels, Samples): Audio data that is Bandpass Filtered between 300 and 10000 Hz, list of 2darrays
song_indexlist | shape = [Chunk]->(absolute start, absolute end): List of the Absolute Start and End of Each Chunk for that Recordings Day
song_ledgerlist | shape = [Chunk]->(first epoch, …, last epoch): Ledger of which epochs occur in each Chunk, Chunks that only contain one Epoch have a length of 1
kwe_timesarray: array of the absolute start of the labels
kwe_epoch_timesarray, | shape = (num_motifs, 2): Absolute start and end time of the old epochs (Start Sample, End Sample)
song_handlabelslist of dicts: List of all Dictionaries containing all of the handlabels for each chunk for one day shape: [chunk_num] -> {‘labels’ : [labels, onsets],

‘female’ : [labels, onsets], ‘KWE’ : [time], ‘old_epochs’ : {‘epoch_#’ : [labels, onsets]} # Only if Labeled the old way }

__init__(self, bird_id: str, session: str, data_type='LPF_DS', location=None)¶: Initialize self. See help(type(self)) for accurate signature.

Methods

__init__(self, bird_id, session[, …])

Initialize self.

Examples using `BirdSongToolbox.import_data.ImportData`¶